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1

Genomic selection in forest tree breeding

Dario Grattapaglia, Marcos D. V. Resende

Journal:

Tree Genetics & Genomes

Year:

2011

Language:

english

File:

PDF, 620 KB

english, 2011

2

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

Butler, Jakob B., Freeman, Jules S., Potts, Brad M., Vaillancourt, René E., Grattapaglia, Dario, Silva-Junior, Orzenil B., Simmons, Blake A., Healey, Adam L., Schmutz, Jeremy, Barry, Kerrie W., Lee, D

Journal:

Year:

2018

Language:

english

File:

PDF, 2.14 MB

english, 2018

3

Genetic composition of Brazilian population samples based on a set of twenty-eight ancestry informative SNPs

Tulio C. Lins, Rodrigo G. Vieira, Breno S. Abreu, Dario Grattapaglia, Rinaldo W. Pereira

Journal:

American Journal of Human Biology

Year:

2010

Language:

english

File:

PDF, 108 KB

english, 2010

4

Microsatellite markers for Ceiba pentandra (Bombacaceae), an endangered tree species of the Amazon forest

R. P. V. Brondani, F. A. Gaiotto, A. A. Missiaggia, M. Kirst, R. Gribel, D. Grattapaglia

Journal:

Molecular Ecology Resources

Year:

2003

Language:

english

File:

PDF, 71 KB

english, 2003

5

Genomics of growth traits in forest trees

Dario Grattapaglia, Christophe Plomion, Matias Kirst, Ronald R Sederoff

Journal:

Current Opinion in Plant Biology

Year:

2009

Language:

english

File:

PDF, 692 KB

english, 2009

6

The genome of Eucalyptus grandis

Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Hellsten, Uffe, Hayes, Richard D., Grimwood, Jane, Jenkins, Jerry, Lindquist, Erika, Tice, Hope, Bauer, Diane, Goodstein, David M., Dubcha

Journal:

Year:

2014

Language:

english

File:

PDF, 7.91 MB

english, 2014

7

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence

Grattapaglia, Dario, Mamani, Eva M. C., Silva-Junior, Orzenil B., Faria, Danielle A.

Journal:

Molecular Ecology Resources

Year:

2015

Language:

english

File:

PDF, 375 KB

english, 2015

8

Environmental uniformity, site quality and tree competition interact to determine stand productivity of clonal Eucalyptus

Resende, Rafael T., Soares, Alvaro A.V., Forrester, David I., Marcatti, Gustavo E., dos Santos, Alexandre R., Takahashi, Elizabete K., e Silva, Fabyano F., Grattapaglia, Dario, Resende, Marcos Deon V.

Journal:

Forest Ecology and Management

Year:

2018

Language:

english

File:

PDF, 845 KB

english, 2018

9

Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications

Inglis, Peter W., Pappas, Marilia de Castro R., Resende, Lucileide V., Grattapaglia, Dario, Kalendar, Ruslan

Journal:

Year:

2018

Language:

english

File:

PDF, 1.87 MB

english, 2018

10

Historical genetics: Spatiotemporal analysis of the formation of the Brazilian population

Sidia M. Callegari-Jacques, Dario Grattapaglia, Francisco M. Salzano, Sabrina P. Salamoni, Shaiane G. Crossetti, Márcio E. Ferreira, Mara H. Hutz

Journal:

American Journal of Human Biology

Year:

2003

Language:

english

File:

PDF, 109 KB

english, 2003

11

Haplotype diversity of 17 Y-chromosome STRs in Brazilians

Rinaldo W. Pereira, Erika H.G. Monteiro, Gabriela C.R. Hirschfeld, Alexandre Y. Wang, Dario Grattapaglia

Journal:

Forensic Science International

Year:

2007

Language:

english

File:

PDF, 121 KB

english, 2007

12

Y-chromosome STR haplotype diversity in Brazilian populations

Dario Grattapaglia, Sergei Kalupniek, Claudia S. Guimarães, Mônica A. Ribeiro, Polyanna S. Diener, Camila N. Soares

Journal:

Forensic Science International

Year:

2005

Language:

english

File:

PDF, 88 KB

english, 2005

13

Brazilian population database for the 13 STR loci of the AmpFlSTR® Profiler Plus™ and Cofiler™ multiplex kits

D. Grattapaglia, A.B. Schmidt, C. Costa e Silva, C. Stringher, A.P. Fernandes, M.E. Ferreira

Journal:

Forensic Science International

Year:

2001

Language:

english

File:

PDF, 47 KB

english, 2001

14

Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense

Rosane Garcia Collevatti, Rosana Vianello Brondani, Dario Grattapaglia

Journal:

Year:

1999

Language:

english

File:

PDF, 172 KB

english, 1999

15

High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliense, an endangered tropical tree species

Rosane Garcia Collevatti, Dario Grattapaglia, John Duvall Hay

Journal:

Year:

2001

Language:

english

File:

PDF, 192 KB

english, 2001

16

Analysis of genetic relationships of Central American and Mexican pines using RAPD markers that distinguish species

B. J. Furman, D. Grattapaglia, W. S. Dvorak, D. M. O'Malley

Journal:

Molecular Ecology

Year:

1997

Language:

english

File:

PDF, 271 KB

english, 1997

17

Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci

Rosane G. Collevatti, Dario Grattapaglia, John D. Hay

Journal:

Molecular Ecology

Year:

2001

Language:

english

File:

PDF, 352 KB

english, 2001

18

Evidences for multiple maternal lineages of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis of chloroplast DNA sequences and microsatellite haplotype variation

Rosane G. Collevatti, Dario Grattapaglia, JOHN. D. Hay

Journal:

Molecular Ecology

Year:

2003

Language:

english

File:

PDF, 265 KB

english, 2003

19

Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation

Maristerra R. Lemes, Rogério Gribel, John Proctor, Dario Grattapaglia

Journal:

Molecular Ecology

Year:

2003

Language:

english

File:

PDF, 147 KB

english, 2003

20

Microsatellite markers for heart of palm –Euterpe edulis and E. oleracea Mart. (Arecaceae)

F. A. Gaiotto, R. P. V. Brondani, D. Grattapaglia

Journal:

Molecular Ecology Resources

Year:

2001

Language:

english

File:

PDF, 157 KB

english, 2001

21

Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil

Andréa A Egito, Samuel R Paiva, Maria do Socorro M Albuquerque, Arthur S Mariante, Leonardo D Almeida, Silvia R Castro, Dario Grattapaglia

Journal:

Year:

2007

Language:

english

File:

PDF, 1.14 MB

english, 2007

22

AdvancingEucalyptusgenomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Jorge AP Paiva, Elisa Prat, Sonia Vautrin, Mauro D Santos, Hélène San-Clemente, Sérgio Brommonschenkel, Paulo GS Fonseca, Dario Grattapaglia, Xiang Song, Jetty SS Ammiraju, David Kudrna, Rod A Wing, A

Journal:

Year:

2011

Language:

english

File:

PDF, 1.45 MB

english, 2011

23

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) inEucalyptus

Leandro G Neves, Eva MC Mamani, Acelino C Alfenas, Matias Kirst, Dario Grattapaglia

Journal:

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

24

High-throughput SNP genotyping in the highly heterozygous genome ofEucalyptus: assay success, polymorphism and transferability across species

Dario Grattapaglia, Orzenil B Silva-Junior, Matias Kirst, Bruno Marco de Lima, Danielle A Faria, Georgios J Pappas

Journal:

BMC Plant Biology

Year:

2011

Language:

english

File:

PDF, 572 KB

english, 2011

25

TheEucalyptus grandisGenome Project: Genome and transcriptome resources for comparative analysis of woody plant biology

Alexander Myburg, Dario Grattapaglia, Gerald Tuskan, Jerry Jenkins, Jeremy Schmutz, Eshchar Mizrachi, Charles Hefer, Georgios Pappas, Lieven Sterck, Yves Van De Peer, Richard Hayes, Daniel Rokhsar

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 97 KB

english, 2011

26

IUFRO Tree Biotechnology 2011: "From genomes to integration and delivery"

Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 84 KB

english, 2011

27

Eucalyptusresearch in the post-genome era

Georgios Pappas, Sergio de Alencar, Orzenil B Silva-Junior, Roberto C Togawa, Marilia CR Pappas, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 85 KB

english, 2011

28

Stability of Genomic Selection prediction models across ages and environments

Marcio FR Resende, Patricio R Muñoz Del Valle, Juan J Acosta, Marcos DV Resende, Dario Grattapaglia, Matias Kirst

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 168 KB

english, 2011

29

Genomic Selection for growth traits inEucalyptus: accuracy within and across breeding populations

Dario Grattapaglia, Deon Marcos Vilela Resende, Márcio Ribeiro Resende, Carolina Paola Sansaloni, Cesar Daniel Petroli, Alexandre Alves Missiaggia, Elisabete Keiko Takahashi, Carnielli Karina Zamprogn

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 95 KB

english, 2011

30

Interspecific discovery and expression profiling ofEucalyptusmicro RNAs by deep sequencing

Marília Pappas, Alessandra Reis, Laurent Farinell, Giancarlo Pasquali, Georgios Pappas, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 95 KB

english, 2011

31

A genetic linkage map for a Full sib population ofEucalyptus grandisusing SSR, DArT, CG-SSR and EST-SSR markers

Martín García, Pamela Villalba, Cintia Acuña, Javier Oberschelp, Leonel Harrand, Mauro Surenciski, María Martínez, César Petroli, Carolina Sansaloni, Danielle Faria, Dario Grattapaglia, Susana Marcucc

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 96 KB

english, 2011

32

How many genes might underlie QTLs for growth and wood quality traits inEucalyptus?

Carolina Sansaloni, César Petroli, Georgios Pappas, Orzenil Da Silva, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 94 KB

english, 2011

33

A new set of 182 microsatellites forEucalyptus: characterization and mapping in a four-species consensus linkage map

Danielle Faria, Eva Mamani, Juliana Sena, Alexandre Alves, Clarissa Falcao, Rodrigo Lourenço, Georgios Pappas, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 92 KB

english, 2011

34

Comparative assessment of SNPs and microsatellites for fingerprinting, parentage and assignment testing in species ofEucalyptus

Leonardo Correia, Danielle Faria, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 90 KB

english, 2011

35

QTL associated with resistance to defoliation(Cylindrocladium pteridis)inEucalyptus spp.

Talyta G Zarpelon, Lúcio MS Guimarães, Marcelo M Coutinho, Braz Cápua Neto, Danielle A Faria, Dario Grattapaglia, Acelino C Alfenas

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 76 KB

english, 2011

36

Development of DArT (Diversity Arrays Technology) for high-throughput genotyping ofPinus taedaand closely related species

Dione MT Alves-Freitas, Andrzej Kilian, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 94 KB

english, 2011

37

Assessment of SNPs for linkage mapping inEucalyptus: construction of a consensus SNP/microsatellite map from two unrelated pedigrees

Bruno Marco Lima, Orzenil B Silva-Junior, Danielle A Faria, Eva MC Mamani, Georgios J Pappas, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 92 KB

english, 2011

38

Genome-wide genotyping and SNP discovery by ultra-deep Restriction-Associated DNA (RAD) tag sequencing of pooled samples ofE. grandisandE. globulus

Dario Grattapaglia, Sergio de Alencar, Georgios Pappas

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 203 KB

english, 2011

39

Biotech MERCOSUR project: an integrated genotyping and phenotyping platform ofEucalyptusgermplasm for mapping purposes

Susana N Marcucci Poltri, Nuno Borralho, José Carlos Rodrigues, José Elizaul, Mirtha Vera de Ortiz, César Cardozo, Guillermo Salvatierra, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 85 KB

english, 2011

40

Identification of a novel QTL contributing to rust resistance inEucalyptus

Bruno M Lima, Juliana EC Teixeira, Rodrigo Gazaffi, Antonio AF Garcia, Dario Grattapaglia, Raphaelle KD Valle, Luis EA Camargo

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 184 KB

english, 2011

41

Genome wide selection forEucalyptusimprovement at international paper in Brazil

Carla Garcia, Bruno Lima, Adriano Almeida, Wesley Marques, Marcos Resende, Roland Vencovsky, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

42

Genome-wide SNP discovery from a pooled sample of accessions of the biofuel plantJatropha curcasbased on whole-transcriptome Illumina resequencing

Orzenil B Silva-Junior, Tatiana B Rosado, Bruno G Laviola, Marilia R Pappas, Georgios J Pappas, Dario Grattapaglia

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 141 KB

english, 2011

43

Diversity Arrays Technology (DArT) and next-generation sequencing combined: genome-wide, high throughput, highly informative genotyping for molecular breeding ofEucalyptus

Carolina Sansaloni, Cesar Petroli, Damian Jaccoud, Jason Carling, Frank Detering, Dario Grattapaglia, Andrzej Kilian

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 94 KB

english, 2011

44

Genetic mapping of QTLs controlling vegetative propagation inEucalyptus grandisandE. urophyllausing a pseudo-testcross strategy and RAPD markers

D. Grattapaglia, F. L. Bertolucci, R. R. Sederoff

Journal:

Theoretical and Applied Genetics

Year:

1995

Language:

english

File:

PDF, 2.23 MB

english, 1995

45

Conservation and synteny of SSR loci and QTLs for vegetative propagation in fourEucalyptusspecies

C. Marques, R. Brondani, D. Grattapaglia, R. Sederoff

Journal:

Theoretical and Applied Genetics

Year:

2002

Language:

english

File:

PDF, 55 KB

english, 2002

46

Resistance to rust (Puccinia psidiiWinter) inEucalyptus: mode of inheritance and mapping of a major gene with RAPD markers

D.T. Junghans, A.C. Alfenas, S.H. Brommonschenkel, S. Oda, E.J. Mello, D. Grattapaglia

Journal:

Theoretical and Applied Genetics

Year:

2003

Language:

english

File:

PDF, 182 KB

english, 2003

47

Retrospective selection of elite parent trees using paternity testing with microsatellite markers: an alternative short term breeding tactic forEucalyptus

D. Grattapaglia, V.J. Ribeiro, G.D.S.P. Rezende

Journal:

Theoretical and Applied Genetics

Year:

2004

Language:

english

File:

PDF, 163 KB

english, 2004

48

A microsatellite-based, gene-rich linkage map for the AA genome ofArachis(Fabaceae)

M. C. Moretzsohn, L. Leoi, K. Proite, P. M. Guimarães, S. C. M. Leal-Bertioli, M. A. Gimenes, W. S. Martins, J. F. M. Valls, D. Grattapaglia, D. J. Bertioli

Journal:

Theoretical and Applied Genetics

Year:

2005

Language:

english

File:

PDF, 415 KB

english, 2005

49

RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensisJacq.)

M. C. Moretzsohn, C. D. M. Nunes, M. E. Ferreira, D. Grattapaglia

Journal:

Theoretical and Applied Genetics

Year:

2000

Language:

english

File:

PDF, 310 KB

english, 2000

50

Estimation of outcrossing rate in a breeding population of Eucalyptus urophylla with dominant RAPD and AFLP markers

F. A. Gaiotto, M. Bramucci, D. Grattapaglia

Journal:

Theoretical and Applied Genetics

Year:

1997

Language:

english

File:

PDF, 383 KB

english, 1997